Delft 3Dを始めてみよう (4) - 付属波の計算例の実行エラーを修正
前回はコンパイルは上手く行ったのですが、例にある波の計算がエラーで出来なかったところでした。
vagrant@ubuntu-bionic:~/delft3d_repository/examples/07_wave$ ./run.sh
mdw-file : obw.mdw
D3D_HOME : /home/vagrant/delft3d_repository/src/bin/..
Working directory: /home/vagrant/delft3d_repository/examples/07_wave
executing:
/home/vagrant/delft3d_repository/src/bin/../bin/wave obw.mdw 0
--------------------------------------------------------------------------------
- Delft3D
- Deltares, Delft3D-WAVE Version 3.07.00.66656, May 23 2020, 23:01:03
- Open source
-
--------------------------------------------------------------------------------
*** MESSAGE: Delft3D-WAVE runs stand alone
Done reading input
Initialising grids and grid mappings
Start loop over SWAN grids, time = 0.000
Allocate input fields
Allocate and read SWAN depth
Write SWAN depth file
Deallocate input fields
Write SWAN input
<<Run SWAN...
>>...Check file swan_sh.log
/home/vagrant/delft3d_repository/src/bin/../bin/swan_4072ABCDE_del_l64_i11_omp.exe: error while loading shared libraries: libiomp5.so: cannot open shared object file: No such file or directory
mv: cannot stat 'PRINT': No such file or directory
*** WARNING: unable to run SWAN using "swan.sh". Trying with "swan.bat" ...
sh: 1: swan.bat: not found
>>...End of SWAN run
*** ERROR: file 'norm_end' expected to signal a correct SWAN calculation
ERROR: *** ERROR: file 'norm_end' expected to signal a correct SWAN calculation
Wave exited abnormally
terminate called after throwing an instance of 'char const*'
Program received signal SIGABRT: Process abort signal.
Backtrace for this error:
#0 0x1476a6bdd2ed in ???
#1 0x1476a6bdc503 in ???
エラーメッセージを良くみてみるとlibiomp5.soというライブラリファイルがないので起動出来ないとなっています。
デルフト３Dのディレクトリ内を探してみるとファイルはあるようなのでPATHが通っていないのが原因のようです。
vagrant@ubuntu-bionic:~/delft3d_repository$ find ./ -name libiomp5.so ./src/third_party_open/swan/bin/linux/libiomp5.so ./src/third_party_open/esmf/lnx64/bin/libiomp5.so
実行スクリプトのrun.shをみてみると
vagrant@ubuntu-bionic:~/delft3d_repository/examples/07_wave$ cat run.sh #!/bin/bash ../../src/bin/run_dwaves.sh obw.mdw
別のスクリプト../../src/bin/run_dwaves.sh を呼んでいるようなので、この中の実行ファイルを呼んでいるあたりをみてみます。
export LD_LIBRARY_PATH=$libdir:$LD_LIBRARY_PATH
export PATH=$bindir:$PATH
echo "executing:"
echo "$bindir/wave $mdwfile 0"
echo
$bindir/wave $mdwfile 0
LD_LIBRARY_PATHに無理やり先程見つけたファイルのフォルダを追加してみましょう。
export LD_LIBRARY_PATH=$libdir:$LD_LIBRARY_PATH:/home/vagrant/delft3d_repository/src/third_party_open/swan/bin/linux
export PATH=$bindir:$PATH
echo "executing:"
echo "$bindir/wave $mdwfile 0"
echo
$bindir/wave $mdwfile 0
もう一度計算を実行してみます。
vagrant@ubuntu-bionic:~/delft3d_repository/examples/07_wave$ ./run.sh
mdw-file : obw.mdw
D3D_HOME : /home/vagrant/delft3d_repository/src/bin/..
Working directory: /home/vagrant/delft3d_repository/examples/07_wave
executing:
/home/vagrant/delft3d_repository/src/bin/../bin/wave obw.mdw 0
--------------------------------------------------------------------------------
- Delft3D
- Deltares, Delft3D-WAVE Version 3.07.00.66656, May 23 2020, 23:01:03
- Open source
-
--------------------------------------------------------------------------------
*** MESSAGE: Delft3D-WAVE runs stand alone
Done reading input
Initialising grids and grid mappings
Start loop over SWAN grids, time = 0.000
Allocate input fields
Allocate and read SWAN depth
Write SWAN depth file
Deallocate input fields
Write SWAN input
<<Run SWAN...
>>...Check file swan_sh.log
>>...End of SWAN run
Allocate output fields
Read SWAN output
Write WAVE map file, nest 1 time 0.000
Time written 0
Write WAVE NetCDF map file, nest 1 time 0.000
Write WAVE NetCDF his file, nest 1 time 0.000
Start loop over SWAN grids, time = 60.000
Allocate input fields
Allocate and read SWAN depth
Write SWAN depth file
Deallocate input fields
Write SWAN input
<<Run SWAN...
>>...Check file swan_sh.log
>>...End of SWAN run
Allocate output fields
Read SWAN output
Write WAVE map file, nest 1 time 60.000
Time written 60
Write WAVE NetCDF map file, nest 1 time 60.000
Write WAVE NetCDF his file, nest 1 time 60.000
Delft3D-WAVE finished normally.
正常に計算できました。次回は計算結果をプロットしてみましょう。
